DNA Methylation in Genomes of Several Annual Herbaceous and Woody Perennial Plants of Varying Ploidy as Detected by MSAP.
Identifieur interne : 002F36 ( Main/Exploration ); précédent : 002F35; suivant : 002F37DNA Methylation in Genomes of Several Annual Herbaceous and Woody Perennial Plants of Varying Ploidy as Detected by MSAP.
Auteurs : Ai Li ; Bao-Quan Hu ; Zhen-Yi Xue ; Li Chen ; Wei-Xing Wang ; Wen-Qin Song ; Cheng-Bin Chen ; Chun-Guo WangSource :
- Plant molecular biology reporter [ 0735-9640 ] ; 2011.
Abstract
Polyploidization is known to accompany altered DNA methylation in higher plants, which plays an important role in gene expression regulation and maintaining genome stability. While the characteristics of DNA methylation in different polyploid plants are still to be elucidated; here, status of genomic DNA methylation in a series of diploid, triploid, and tetraploid annual herbaceous plants (watermelon and Salvia) and woody perennials (pear, Poplar, and loquat) were explored by methylation-specific amplified polymorphism analysis. The results indicated that levels of DNA methylation in triploid watermelon and Salvia were lower than their diploid parents. In triploid Poplar and pear, higher levels of DNA methylation were detected, and no significant difference was observed between triploid and tetraploid in all tested materials. Further data analysis suggested that about half of the total detected sites underwent changes of DNA methylation patterns in triploid watermelons and Salvia, as well as an obvious trend towards demethylation. However, the changes of DNA methylation patterns in three triploid woody perennials were only 17.54-33.40%. This implied that the characteristics of DNA methylation are significantly different during the polyploidization of different plant species. Furthermore, the results suggested that the level of DNA methylation was nonlinearly related to the ploidy level, and triploid plants displayed more interesting DNA methylation status. The characteristics and possible functions of DNA methylation in different ploidy series are further discussed.
DOI: 10.1007/s11105-010-0280-3
PubMed: 24415835
PubMed Central: PMC3881574
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">DNA Methylation in Genomes of Several Annual Herbaceous and Woody Perennial Plants of Varying Ploidy as Detected by MSAP.</title><author><name sortKey="Li, Ai" sort="Li, Ai" uniqKey="Li A" first="Ai" last="Li">Ai Li</name></author><author><name sortKey="Hu, Bao Quan" sort="Hu, Bao Quan" uniqKey="Hu B" first="Bao-Quan" last="Hu">Bao-Quan Hu</name></author><author><name sortKey="Xue, Zhen Yi" sort="Xue, Zhen Yi" uniqKey="Xue Z" first="Zhen-Yi" last="Xue">Zhen-Yi Xue</name></author><author><name sortKey="Chen, Li" sort="Chen, Li" uniqKey="Chen L" first="Li" last="Chen">Li Chen</name></author><author><name sortKey="Wang, Wei Xing" sort="Wang, Wei Xing" uniqKey="Wang W" first="Wei-Xing" last="Wang">Wei-Xing Wang</name></author><author><name sortKey="Song, Wen Qin" sort="Song, Wen Qin" uniqKey="Song W" first="Wen-Qin" last="Song">Wen-Qin Song</name></author><author><name sortKey="Chen, Cheng Bin" sort="Chen, Cheng Bin" uniqKey="Chen C" first="Cheng-Bin" last="Chen">Cheng-Bin Chen</name></author><author><name sortKey="Wang, Chun Guo" sort="Wang, Chun Guo" uniqKey="Wang C" first="Chun-Guo" last="Wang">Chun-Guo Wang</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2011">2011</date><idno type="RBID">pubmed:24415835</idno><idno type="pmid">24415835</idno><idno type="doi">10.1007/s11105-010-0280-3</idno><idno type="pmc">PMC3881574</idno><idno type="wicri:Area/Main/Corpus">002F64</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002F64</idno><idno type="wicri:Area/Main/Curation">002F64</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">002F64</idno><idno type="wicri:Area/Main/Exploration">002F64</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">DNA Methylation in Genomes of Several Annual Herbaceous and Woody Perennial Plants of Varying Ploidy as Detected by MSAP.</title><author><name sortKey="Li, Ai" sort="Li, Ai" uniqKey="Li A" first="Ai" last="Li">Ai Li</name></author><author><name sortKey="Hu, Bao Quan" sort="Hu, Bao Quan" uniqKey="Hu B" first="Bao-Quan" last="Hu">Bao-Quan Hu</name></author><author><name sortKey="Xue, Zhen Yi" sort="Xue, Zhen Yi" uniqKey="Xue Z" first="Zhen-Yi" last="Xue">Zhen-Yi Xue</name></author><author><name sortKey="Chen, Li" sort="Chen, Li" uniqKey="Chen L" first="Li" last="Chen">Li Chen</name></author><author><name sortKey="Wang, Wei Xing" sort="Wang, Wei Xing" uniqKey="Wang W" first="Wei-Xing" last="Wang">Wei-Xing Wang</name></author><author><name sortKey="Song, Wen Qin" sort="Song, Wen Qin" uniqKey="Song W" first="Wen-Qin" last="Song">Wen-Qin Song</name></author><author><name sortKey="Chen, Cheng Bin" sort="Chen, Cheng Bin" uniqKey="Chen C" first="Cheng-Bin" last="Chen">Cheng-Bin Chen</name></author><author><name sortKey="Wang, Chun Guo" sort="Wang, Chun Guo" uniqKey="Wang C" first="Chun-Guo" last="Wang">Chun-Guo Wang</name></author></analytic><series><title level="j">Plant molecular biology reporter</title><idno type="ISSN">0735-9640</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Polyploidization is known to accompany altered DNA methylation in higher plants, which plays an important role in gene expression regulation and maintaining genome stability. While the characteristics of DNA methylation in different polyploid plants are still to be elucidated; here, status of genomic DNA methylation in a series of diploid, triploid, and tetraploid annual herbaceous plants (watermelon and <i>Salvia</i>) and woody perennials (pear, <i>Poplar</i>, and loquat) were explored by methylation-specific amplified polymorphism analysis. The results indicated that levels of DNA methylation in triploid watermelon and <i>Salvia</i> were lower than their diploid parents. In triploid <i>Poplar</i> and pear, higher levels of DNA methylation were detected, and no significant difference was observed between triploid and tetraploid in all tested materials. Further data analysis suggested that about half of the total detected sites underwent changes of DNA methylation patterns in triploid watermelons and <i>Salvia</i>, as well as an obvious trend towards demethylation. However, the changes of DNA methylation patterns in three triploid woody perennials were only 17.54-33.40%. This implied that the characteristics of DNA methylation are significantly different during the polyploidization of different plant species. Furthermore, the results suggested that the level of DNA methylation was nonlinearly related to the ploidy level, and triploid plants displayed more interesting DNA methylation status. The characteristics and possible functions of DNA methylation in different ploidy series are further discussed.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">24415835</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0735-9640</ISSN><JournalIssue CitedMedium="Print"><Volume>29</Volume><PubDate><Year>2011</Year></PubDate></JournalIssue><Title>Plant molecular biology reporter</Title><ISOAbbreviation>Plant Mol Biol Report</ISOAbbreviation></Journal><ArticleTitle>DNA Methylation in Genomes of Several Annual Herbaceous and Woody Perennial Plants of Varying Ploidy as Detected by MSAP.</ArticleTitle><Pagination><MedlinePgn>784-793</MedlinePgn></Pagination><Abstract><AbstractText>Polyploidization is known to accompany altered DNA methylation in higher plants, which plays an important role in gene expression regulation and maintaining genome stability. While the characteristics of DNA methylation in different polyploid plants are still to be elucidated; here, status of genomic DNA methylation in a series of diploid, triploid, and tetraploid annual herbaceous plants (watermelon and <i>Salvia</i>) and woody perennials (pear, <i>Poplar</i>, and loquat) were explored by methylation-specific amplified polymorphism analysis. The results indicated that levels of DNA methylation in triploid watermelon and <i>Salvia</i> were lower than their diploid parents. In triploid <i>Poplar</i> and pear, higher levels of DNA methylation were detected, and no significant difference was observed between triploid and tetraploid in all tested materials. Further data analysis suggested that about half of the total detected sites underwent changes of DNA methylation patterns in triploid watermelons and <i>Salvia</i>, as well as an obvious trend towards demethylation. However, the changes of DNA methylation patterns in three triploid woody perennials were only 17.54-33.40%. This implied that the characteristics of DNA methylation are significantly different during the polyploidization of different plant species. Furthermore, the results suggested that the level of DNA methylation was nonlinearly related to the ploidy level, and triploid plants displayed more interesting DNA methylation status. The characteristics and possible functions of DNA methylation in different ploidy series are further discussed.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Ai</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Bao-Quan</ForeName><Initials>BQ</Initials></Author><Author ValidYN="Y"><LastName>Xue</LastName><ForeName>Zhen-Yi</ForeName><Initials>ZY</Initials></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Li</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Wei-Xing</ForeName><Initials>WX</Initials></Author><Author ValidYN="Y"><LastName>Song</LastName><ForeName>Wen-Qin</ForeName><Initials>WQ</Initials></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Cheng-Bin</ForeName><Initials>CB</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Chun-Guo</ForeName><Initials>CG</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Mol Biol Report</MedlineTA><NlmUniqueID>9880213</NlmUniqueID><ISSNLinking>0735-9640</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Annual herbaceous plants</Keyword><Keyword MajorTopicYN="N">DNA methylation</Keyword><Keyword MajorTopicYN="N">MSAP</Keyword><Keyword MajorTopicYN="N">Polyploidization</Keyword><Keyword MajorTopicYN="N">Woody perennial</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>1</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>1</Month><Day>1</Day><Hour>0</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>1</Month><Day>1</Day><Hour>0</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24415835</ArticleId><ArticleId IdType="doi">10.1007/s11105-010-0280-3</ArticleId><ArticleId IdType="pii">280</ArticleId><ArticleId IdType="pmc">PMC3881574</ArticleId></ArticleIdList><pmc-dir>pmcsd</pmc-dir>
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